Journal Club

발표일자

발표 논문

저널 / 발행년도

2024.09.24
An integrated tumor, immune and microbiome atlas of colon cancer
Nature/2023
2024.09.10
Genone-wide rare variant analysis for thousands of phenotypes in over 70,000 exomes from two cohort
Nature/2020
2024.09.03
Metabolite interactions between host and microbiota during health and disease : Which feeds the other?
Biomedicine & Pharmacotherapy/2023
2024.08.27
A deep learning-based approach for fully automated segmentation and quantitative analysis of muscle fibers in pig skeletal muscle
Meat Science/2024
2024.08.20
Single-cell transcriptomics across 2,534 microbial species reveals funcctional heterogeneity in the rumen microbiome
Nature/2024
2024.08.13
Review:Smart agri-systems for the pig industry
Animal/2022
2024.07.25
Benchmarking the Mantel test and derived methods for testing association between distance matrices
Molecular ecology resources/2023
2024.07.18
Integrative study of the upper and lower airway microbiome and transcriptome in asthma
JCI Insight/2020
2024.07.11
An 8-gene machine learning model improves clinical prediction of severe dengue progression
Genome Medicine/2022
2024.07.04
Unravelling the human genome–phenome relationship using phenome-wide association studies
Nature Reviews Genetics/2016
2024.06.13
A deep learning-based approach for fully automated segmentation and quantitative analysis of muscle fibers in pig skeletal muscle
Meat Science/2024
2024.05.23
An immunophenotype-coupled transcriptomic atlas of human hematopoietic progenitors
Nature Immunology/2024
2024.05.09
Intramuscular Fat Prediction Using Color and Image Analysis of Bísaro Pork Breed
Food/2021
2024.04.25
Identification of novel discoidin domain receptor 1 (DDR1) inhibitors using E-pharmacophore modeling, structure-based virtual screening, molecular dynamics simulation and MM-GBSA approaches
Computers in Biology and Medicine/2022
2024.04.18
Gut Microbiota and Serum Metabolite Potential Interactions in Growing Layer Hens Exposed to High-Ambient Temperature
Frontiers in Nutrition/2022
2024.04.11
A multi-omics approach unravels metagenomic and metabolic alterations of a probiotic and symbiotic additive in rainbow trout (Oncorhynchus mykiss)
Microbiome/2022
2024.04.04
The Agricultural Genome to Phenome Initiative (AG2PI): creating a shared vision across crop and livestock research communities
Genome Biology2022
2024.04.04
Current challenges and future of agricultural genomes to phenomes in the USA
Genome Biology2024
2024.03.26
Multi-omic interactions in the gut of children at the onset of islet autoimmunity
Microbiome/2022
2024.03.19
Detection of clinically relevant copy-number variants by exome sequencing in a large cohort of genetic disorders
Genetic in Medicine/2017
2024.01.23
Metagenome-scale community metabolic modelling for understanding the role of gut microbiota in human health
Computers in Biology and Medicine/2022
2024.01.09
GenNet framework: interpretable deep learning for predicting phenotypes from genetic data
Communications Biology/2021
2023.12.05
DNA methylation-linked chromatin accessibility affects genomic architecture in Arabidopsis
PNAS/2021
2023.12.05
Genome-wide epigenetic dynamics during postnatal skeletal muscle growth in Hu sheep
Communications Biology/2023
2023.12.05
Integrative profiling of gene expression and chromatin accessibility elucidates specific transcriptional networks in porcine neutrophils
Frontiers in Genetics/2023
2023.11.21
A machine learning‑based SNP‑set analysis approach for identifying disease‑associated susceptibility loci
Scientific reports/2022
2023.10.31
Gene Expression Classification Based on Deep Learning
Conference paper/2019
2023.10.12
Molecular Docking and Molecular Dynamics Simulations Discover Curcumin Analogue as a Plausible Dual Inhibitor for SARS-CoV-2
International Journal of Molecular Sciences/2022
2023.10.05
Integrated analysis of microbiome and host transcriptome reveals correlations between gut microbiota and clinical outcomes in HBV-related hepatocellular carcinoma
Genome Medicine/2020
2023.09.21
Defining and Evaluating Microbial Contributions to Metabolite Variation in Microbiome-Metabolome Association Studies
mSystems/2019
2023.09.12
Mapping the bacterial metabolic niche space
Nature Communications/2020
2023.08.29
Comprehensive mutations analyses of FTO (fat mass and obesity-associated gene) and their effects on FTO’s substrate binding implicated in obesity
Frontiers in Nutrition/2022
2023.08.16
mixOmics: An R package for ‘omics feature selection and multiple data integration
PLoS Computational Biology /2017
2023.08.07
Crop Yield Prediction through Proximal Sensing and Machine Learning Algorithms
Agronomy/2020
2023.07.05
Epigenomics of rats' liver and its cross-species functional annotation reveals key regulatory genes underlying short term heat-stress response
Genomics/2022
2023.06.12
Using Deep Learning Neural Network in Artificial Intelligence Technology to Classify Beef Cuts
Frontiers in Sensors/2021
2023.06.05
Deep Docking: A Deep Learning Platform for Augmentation of Structure Based Drug Discovery
ACS Central Science/2020
2023.06.01
Untangling determinants of gut microbiota and tumor immunologic status through a multi-omics approach in colorectal cancer
Pharmacological Research/2023
2023.05.01
Host and microbiome multi-omics integration: applications and methodologies
Biophysical Reviews/2019
2023.04.24
Microarray expression profiling and co-expression network analysis of circulating LncRNAs and mRNAs associated with neurotoxicity induced by BPA​
Environmental Science and Pollution Research/2018
2023.04.10
A faecal microbiota signature with high specificity for pancreatic cancer
Gut/ 2022
2023.03.27
Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels
Nature communications/2015
2023.03.13
Metabolic Model-Based Integration of Microbiome Taxonomic and Metabolomic Profiles Elucidates Mechanistic Links between Ecological and Metabolic Variation
mSystems/2016
2023.02.28
Statistical and machine learning methods evaluated for incorporating soil and weather into corn nitrogen recommendations
Computers and Electronics in Agriculture/2019
2023.01.26
ChIP-Atlas 2021 update: a data-mining suite for exploring epigenomic landscapes by fully integrating ChIP-seq, ATAC-seq and Bisulfite-seq data
Nucleic Acids Research/2022
2023.01.03
Secondary structure and domain architecture of the 23S and 5S rRNAs
Nucleic Acids Research / 2013
2022.11.29
Identification of shared and disease-specific host gene–microbiome associations across human diseases using multi-omic integration
Nature Microbiology / 2022
2022.11.22
Transgenerational effects of Bisphenol A on gene expression and DNA methylation of imprinted genes in brain
Endocrinology / 2018
2022.11.08
Identification of bacteria-derived HLA-bound peptides in melanoma
Nature / 2021
2022.11.01
Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts
Nature Communications / 2020
2022.10.18
Predictive metabolomic profiling of microbial communities using amplicon or metagenomic sequences
Nature Communication / 2019
2022.10.11
Deep Learning and Genome-Wide Association Studies for the Classification of Type 2 Diabetes
IEEE Conference paper / 2020
2022.10.04
Comprehensive epigenetic landscape of rheumatoid arthritis fibroblast-like synoviocytes
Nature Communications / 2018
2022.09.27
Single-cell connectomic analysis of adult mammalian lungs
Science Advances / 2019
2022.09.06
Heat stress affects duodenal microbial community of indigenous yellow-feather broilers as determined by 16S rRNA sequencing
Italian Journal of Animal Science / 2021
2022.08.09
Structural insights into inhibition of PRRSV Nsp4 revealed by structure-based virtual screening, molecular dynamics, and MM-PBSA studies
Journal of Biological Engineering / 2022
2022.08.02
Identification of key modules and genes associated with breast cancer prognosis using WGCNA and ceRNA network analysis
Aging-US / 2020
2022.07.26
Integrated lncRNA function upon genomic and epigenomic regulation
Molecular Cell /2022
2022.07.19
Characterization of chilled chicken spoilage using an integrated microbiome and metabolomics analysis
Food Research International /2021
2022.07.12
Long-term antibiotic use during early life and risks to mental traits: an observational study and gene–environment-wide interaction study in UK Biobank cohort
Neuropsychopharmacology / 2020
2022.07.05
Multi-omics reveals that the rumen microbiome and its metabolome together with the host metabolome contribute to individualized dairy cow performance
Microbiome / 2020
2022.06.07
Transcriptome sequencing and metabolome analysis of food habits domestication from live prey fish to artificial diets
BMC Genomics / 2021
2022.05.31
A high-resolution cell atlas of the domestic pig lung and an online platform for exploring lung single-cell data
Journal of Genetics and Genomics / 2021
2022.05.24
Transcriptome-wide association study identifies multiple genes and pathways associated with thyroid function
Human Molecular Genetics / 2021
2022.05.17
Regulation of gene expression by cis-acting long non-coding RNAs
Nature Reviews Genetics / 2020
2022.05.10
Investigation of a derived adverse outcome pathway (AOP) network for endocrine-mediated perturbations
Science of the total environment / 2021
2022.05.03
Bacterial associations in the healthy human gut microbiome across populations
Scientific Reports / 2021
2022.04.19
A systematic comprehensive longitudinal evaluation of dietary factors associated with acute myocardial infarction and fatal coronary heart disease
Nature communications / 2020
2022.04.12
Hybrid metagenomic assembly enables high-resolution analysis of resistance determinants and mobile elements in human microbiomes
Nature Biotechnology / 2019
2022.04.05
Deep learning-based identification of genetic variants: application to Alzheimer’s disease classification
Briefings in Bioinformatics / 2022
2022.03.31
Genome-wide identification of RNA editing in seven porcine tissues by matched DNA and RNA high-throughput sequencing
Journal of Animal Science and Biotechnology / 2019
2022.03.03
Reference Transcriptomes of Porcine Peripheral Immune Cells Created Through Bulk and Single-Cell RNA Sequencing
Front Genet / 2021
2022.02.23
A time-resolved multi-omic atlas of the developing mouse stomach
Nature Communications / 2018
2022.02.16
Explaining and Harnessing adversarial examples
arXiv preprint arXiv / 2014
2022.02.08
An Integrative Analysis of Transcriptome and GWAS Data to Identify Potential Candidate Genes Influencing Meat Quality Traits in Pigs
Front Genet / 2021
2022.01.19
Weaning Alters Intestinal Gene Expression Involved in Nutrient Metabolism by Shaping Gut Microbiota in Pigs
Front Microbiol / 2020
2022.01.19
Comprehensive identification of sexually dimorphic genes in diverse cattle tissues using RNA-seq
BMC Genomics / 2016
2022.01.12
Regulation of immune responses by extracellular vesicles
Nature Reviews Immunology / 2014
2021.12.22
New insight into long non‑coding RNAs associated with bone metastasis of breast cancer based on an integrated analysis
Cancer Cell International / 2021
2021.12.08
A gene co-association network regulating gut microbial communities in a Duroc pig population
Microbiome / 2021
2021.12.02
Mouse aging cell atlas analysis reveals global and cell type-specific aging signatures
Elife / 2021
2021.11.24
SARS-CoV-2 infection initiates interleukin-17-enriched transcriptional response in different cells from multiple organs
Scientific reports / 2021
2021.11.17
Functional single-cell genomics of human cytomegalovirus infection
Nature Biotechnology / 2021
2021.11.10
Effects of stocking density on growth performance, blood parameters and immunity of growing pigs
Animal Nutrition / 2020
2021.11.10
Early and later life environmental enrichment affect specific antibody responses and blood leukocyte subpopulations in pigs
Physiology & Behavior / 2020
2021.11.10
Space allowance determination by considering its coeffect with toy provision on production performance, behavior and physiology for grouped growing pigs
Livestock Science / 2021
2021.11.10
Psychosocial Stress and Immunity—What Can We Learn From Pig Studies?
Frontiers in Behavioural Neuroscience / 2018
2021.11.03
Q&A What are exosomes, exactly
BMC Biology / 2016
2021.11.03
The biology , function , and biomedical applications of exosomes
Science / 2020
2021.10.13
Children’s Greenness Exposure and IQ-Associated DNA Methylation: A Prospective Cohort Study
Int. J. Environ. Res. Public Health / 2021
2021.10.13
Trans- and cis-acting effects of the lncRNA Firre on epigenetic and structural features of the inactive X chromosome
Nature Communications / 2020
2021.10.06
Early microbial colonization affects DNA methylation of genes related to intestinal immunity and metabolism in preterm pigs
DNA Research / 2018
2021.10.06
A genomic atlas of systemic interindividual epigenetic variation in humans
Genome Biology / 2019
2021.09.30
Annotation and cluster analysis of spatiotemporal- and sex-related lncRNA expression in rhesus macaque brain
Genome Research / 2017
2021.09.15
Influence of pig gut microbiota on Mycoplasma hyopneumoniae susceptibility
Veterianry Research / 2019
2021.09.08
A comprehensive epigenome atlas reveals DNA methylation regulating skeletal muscle development
Nucleic Acids Research / 2021
2021.08.27
A gene expression atlas for different kinds of stress in the mouse brain
Scientific Data / 2020
2021.08.19
Spatiotemporal analysis of human intestinal development at single-cell resolution
Cell / 2021
2021.07.29
Transcriptome profiles of hypothalamus and adrenal gland linked to haplotype related to coping behavior in pigs
Scientific Reports / 2019
2021.07.21
Risk in Relatives, Heritability, SNP-Based Heritability, and Genetic Correlations in Psychiatric Disorders: A Review
Biological Psychiatry / 2019
2021.07.14
Longitudinal investigation of the swine gut microbiome from birth to market reveals stage and growth performance associated bacteria
Microbiome / 2019
2021.07.07
A comprehensive overview of lncRNA annotation resources
Briefings in Bioinformatics / 2017
2021.06.30
A Microbiota-Derived Bacteriocin Targets the Host to Confer Diarrhea Resistance in Early-Weaned Piglets
Cell Host & Microbe / 2018
2021.06.04
Early-life DNA methylation profiles are indicative of age-related transcriptome changes
Epigenetic & Chromatin / 2019
2021.05.28
Brain transcriptome atlases: a computational perspective
Brain Structure and Function / 2017
2021.05.21
Identifying Cancer Driver lncRNAs Bridged by Functional Effectors through Integrating Multi-omics Data in Human Cancers
Molecular Therapy-Nucleic Acids / 2019
2021.05.14
Recent advances in deep learning for object detection
Neurocomputing / 2020
2021.05.14
Faster r-cnn Towards real time object detection with region proposal networks
Advances in neural information processing systems / 2015
2021.04.30
Associated weight matrix for the genetic dissection of puberty in beef cattle
PNAS / 2010
2021.04.16
Microbiota-directed fibre activates both targeted and secondary metabolic shifts in the distal gut
Nature communications / 2020
2021.04.09
Berberine ameliorates vascular dysfunction by a global modulation of lncRNA and mRNA expression profiles in hypertensive mouse aortae
PLOSONE / 2021
2021.04.02
Airway host-microbiome interactions in chronic obstructive pulmonary disease
Respiratory research / 2019
2021.03.26
Comparative whole genome DNA methylation profiling across cattle tissues reveals global and tissue-specific methylation patterns
BMC biology / 2020
2021.03.12
Histological investigations on thymus of male rats prenatally exposed to bisphenol A
Chemosphere / 2018
2021.03.05
Structural cells are key regulators of organ-specific immune responses
Nature / 2020
2021.02.09
Identifying biomarkers of dietary patterns by using metabolomics
The American journal of clinical nutrition / 2016
2021.01.28
Estimates of Genetic Parameters for Canadian Holstein Female Reproduction Traits
Journal of dairy science / 2005
2021.01.21
The respiratory tract microbiome and lung inflammation a two-way street
Mucosal immunology / 2016
2021.01.21
Role of the microbiome in swine respiratory disease
Veterinary microbiology / 2017
2021.01.13
Genome-wide analysis of long non-coding RNAs and their role in postnatal porcine testis development
Genomics / 2017
2020.12.08
Host-Viral Infection Maps Reveal Signatures of Severe COVID-19 Patients
Cell / 2020
2020.12.01
Comparison of genome-wide association and genomic prediction methods for milk production traits in Korean Holstein cattle
Asian-Australasian journal of animal sciences / 2019
2020.11.24
Mergeomics: multidimensional data integration to identify pathogenic perturbations to biological systems
BMC Genomics / 2016
2020.11.19
Assembly methods for nanopore-based metagenomic sequencing: a comparative study
Scientific reports / 2020
2020.11.03
MetaRibo-Seq measures translation in microbiomes
Nature communications / 2020
2020.10.27
EM-seq: Detection of DNA Methylation at Single Base Resolution from Picograms of DNA
BioRxiv / 2020
2020.10.27
Comprehensive analyses of 723 transcriptomes enhance genetic and biological interpretations for complex traits in cattle
Genome research / 2020
2020.10.13
Integrative genomics analysis of various omics data and networks identify risk genes and variants vulnerable to childhood-onset asthma
BMC medical genomics / 2020
2020.10.13
The Architecture of SARS-CoV-2 Transcriptome
Cell / 2020
2020.09.22
EfficientNet: Rethinking Model Scaling for Convolutional Neural Networks
International Conference on Machine Learning / 2019
2020.09.08
A novel deep learning method for predictive modeling of microbiome data
Briefings in Bioinformatics / 2020
2020.09.02
Potential regulatory role of lncRNA-miRNA-mRNA axis in osteosarcoma.
Biomedicine & Pharmacotherapy / 2020
2020.08.24
Multi-omic meta-analysis identifies functional signatures of airway microbiome in chronic obstructive pulmonary disease
The ISME Journal / 2020
2020.08.18
Methylome and transcriptome maps of human visceral and subcutaneous adipocytes reveal key epigenetic differences at developmental genes
Scientific reports / 2019
2020.08.10
LncRNA and mRNA integration network reconstruction reveals novel keyregulators in esophageal squamous-cell carcinoma
Genomics / 2019
2020.08.03
Comprehensive analyses of 723 transcriptomes enhance genetic and biological interpretations for complex traits in cattle
Genome research / 2020
2020.07.27
Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts
Nature genetics / 2009
2020.07.20
Fully Convolutional Networks for Semantic Segmentation
Proceedings of the IEEE conference on computer vision and pattern recognition / 2015
2020.07.13
Correlation detection strategies in microbial data sets vary widely in sensitivity and precision
The ISME journal / 2016
2020.07.06
Analyses of Long Non-Coding RNA and mRNA profiling using RNA sequencing during the pre-implantation phases in pig endometrium
Scientific reports / 2016
2020.06.29
Experience-dependent epigenomic reorganization in the hippocampus
Learning & Memory / 2017
2020.06.15
Interactions between the gut microbiome and host gene regulation in cystic fibrosis
Genome Medicine / 2020
2020.06.08
Development of a Predictive Model for Type 2 Diabetes Mellitus Using Genetic and Clinical Data
Osong Public Health Research Perspectives / 2011
2020.06.01
A novle lncRNA, LUADT1, promotes lung adenocarcinoma proliferation via the epigenetic suppression of p27
Cell Death & Disease / 2015
2020.05.25
Spatial Transformer Networks
Advances in neural information processing systems / 2015
2020.05.18
A Genome-Wide Association Study of Gestational Diabetes Mellitus in Korean Women
Diabetes / 2012
2020.05.11
The Integrative Human Microbiome Project
Nature / 2019
2020.05.04
The small peptide world in long noncoding RNAs
Briefings in Bioinformatics / 2019
2020.04.27
Tools for Analysis of the Microbiome
Digestive Diseases and Sciences / 2020
2020.04.20
DNA methylation, microRNA expression profiles and their relationships with transcriptome in grass-fed and grain-fed Angus cattle rumen tissue
PLoS One / 2019
2020.04.13
Artificial intelligence in clinical and genomic diagnostics
Genome medicine / 2019
2020.04.06
RASflow an RNA-Seq analysis workflow with Snakemake
BMC Bioinformatics / 2020
2020.03.30
Detection of Red-Meat Adulteration by Deep Spectral–Spatial Features in Hyperspectral Images
Journal of Imaging / 2018
2020.03.23
High genetic risk scores fore impaired insulin secretory capacity doubles the risk for type 2 diabetes in Asians and is exacerbated by Western-type diets
Diabetes-Metabolism research and reviews / 2018
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